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High-Performance Computing.
Training.
High-Speed Networking.

What is SCINet?

The SCINet initiative is an effort by the USDA Agricultural Research Service (ARS) to grow USDA’s research capacity by providing scientists with access to high-performance computing clusters, high-speed networking for data transfer, and training in scientific computing.

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ARS scientists/collaborators:
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Upcoming Trainings and Events

  • Bioinformatics Foundations · Genome Assembly

    In this interactive, hands-on workshop, you will learn how to use SCINet’s computing resources to convert raw DNA sequencing data into a complete genome assembly. Along the way, you will also learn best practices for ensuring that your genome assemblies are robust and useful for downstream analyses.

  • Using large language models (LLMs) on SCINet's supercomputers

    Large language models (LLMs), a key technology behind well-known tools like ChatGPT and Microsoft Copilot, have a multitude of applications in agricultural research. SCINet’s high-performance computing resources provide an excellent environment for research use of LLMs, and this workshop will equip you with the knowledge and tools you need to take advantage of LLM capabilities in your research.

  • Bioinformatics Foundations · Introduction to RNA-seq Analysis

    In this workshop we will provide an overview of RNA-sequencing (RNA-seq) technology and best practices for experimental design. Participants will also explore preprocessing steps, read alignment using a reference genome, and differential expression analysis using DESeq2. We will also introduce tools for functional analysis and determining the biological relevance of the results.

    • May 4, 6-7, 2026, 1 – 5 PM ET
      • Registration: Register Here
      • Prerequisites:
        • Familiarity with basic command-line concepts, next-generation sequencing data types, and have a general understanding of gene expression.
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